Bioinformatics Project FAQ
Frequently asked questions
Guidance for preparing a project enquiry and discussing the analysis scope.
Can I discuss a study before sequencing?
Yes, use the project brief to describe the question, proposed assay, sample groups and planned outputs. The consultation can identify analysis requirements to discuss before data generation.
Can I request a review of vendor results?
Describe the vendor workflow and provide an inventory of the available reports, tables and source data. The review scope depends on which records and data are available.
Can public datasets be used?
Include the accession, repository and relevant publication, plus the biological comparison you want to investigate. Availability of suitable metadata and samples should be reviewed before analysis.
Which file formats should I prepare?
Begin with the relevant service guide and metadata checklist. Read files, count matrices, variant files and processed objects require different checks, and the transfer format is agreed for the project.
How many samples are needed?
There is no single number that fits all studies. Replication, effect size, variability, pairing and the intended comparison determine the design requirements. Clearly distinguish biological samples from technical repeats, cells and pooled libraries.
What will the project deliver?
Discuss which report, result tables, figures, processed data and method records are required. The agreed scope determines the deliverables and formats.
Can the analysis support a manuscript?
Discuss the figures, methods description and analysis records needed for your manuscript. Interpretation and publication decisions remain the responsibility of the research team.
What are the cost and timeline?
These depend on the input data, analysis scope, computing requirements and reporting needs. State any deadline in the brief so it can be discussed before work is agreed.
Does this website upload or analyse my data?
The project-brief tool creates a text file in your browser. Download it and contact Bitnome by WhatsApp or email. No data upload or analysis submission is performed by this tool.
How should sensitive data be shared?
Agree on an authorized transfer method and the necessary permissions before sharing. The initial brief should use coded identifiers and a general study description.