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Review sample quality, alignment metrics, and analysis summaries in one report.

Alignment overviewMULTIQC REPORT

Aligned reads by sample

Aligned read percentages for six samples, ranging from 82.2 to 98.1 percent

Alignment rates across six samples. Amber highlights the two lowest values shown.

Selected sample metrics

Sample Aligned Unique
SRR3192396 97.2% 93.7%
SRR3192397 98.1% 94.7%
SRR3192398 95.9% 88.2%
SRR3192399 96.3% 88.2%
SRR3192400 83.1% 77.3%
SRR3192401 82.2% 76.4%

Alignment metrics (%) · Values rounded to one decimal place. Unique = uniquely aligned reads.

Example QC report · Source: MultiQC / SeqeraExplore full report ↗

Source and interpretation

The original report is hosted by Seqera and lists MultiQC version 1.35. This preview reproduces six selected sample rows from General Statistics, with aligned and uniquely aligned read percentages. The chart and table use the same values.

The publisher describes an RNA-seq workflow accidentally applied to ChIP-seq data. This example illustrates QC report presentation; analytical suitability requires an assay-specific workflow.

Explore full report ↗ · Publisher context ↗

Reading the metrics

Alignment metrics support sample-level review alongside other QC measures and study metadata.

Attribution

MultiQC: Ewels et al. (2016), Bioinformatics. doi:10.1093/bioinformatics/btw354. Source accessed 13 October 2026. Values reproduced to one decimal place.